GSM1904943: C581_05_LB_0.5_BR1_2; Escherichia coli C581_05; RNA-Seq - SRA

SRX1322481: GSM1904943: C581_05_LB_0.5_BR1_2; Escherichia coli C581_05; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 34.1M spots, 6.9G bases, 4.3Gb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Comparative transcriptomics of the virulence regulons of enteropathogenic Escherichia coli from diverse phylogenomic lineages

PRJNA298339 • SRP064662 • All experiments • All runs

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Global transcriptional analysis of eleven EPEC strains, including the most frequently studied strains used in laboratory studies investigating EPEC virulence mechanisms. Overall design: RNA sequencing was performed on the four EPEC prototype strains during growth in laboratory media and conditions that have been previously demonstrated to induce expression of EPEC virulence factors.

Sample: C581_05_LB_0.5_BR1_2

SAMN04158446 • SRS1109932 • All experiments • All runs

Organism: Escherichia coli C581_05

Library:

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: RNA was isolated from cells grown in LB or DMEM using the Ribopure Bacteria kit (Ambion) and contaminating DNA was removed using the Ribopure Dnase I and also the Turbo DNA-free kit (Ambion). RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM1904943

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 34.1M spots, 6.9G bases, 4.3Gb

Run	# of Spots	# of Bases	Size	Published
SRR2601729	34,076,853	6.9G	4.3Gb	2017-05-10

ID:: 1887158

SRA

Sequence Read Archive

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